The DVD deleted scenes include the following:
- An extended scene of Sister Assumpta and Father Casey erasing things from the school's books while the boys dangle the statue outside.
- The scene where the newsie gives Francis and Tim the angel dust is longer. The original scene ends with the newsie smoking the pot and saying "Tastes like one, too." The new addition to the scene shows Francis and Tim actually taking the drug and we see the newsie's wife come out and try some too. The aftermath of their drug use is slightly longer (the spinning trees).
- Tim tells Francis angel dust is animal tranquilizer. Francis asks Tim why angel dust isn't called animal tranquilizer to which Tim responds, "They probably wanted people to try it. That's why they call them sisters and not permanent virgins."