- When Dr. Magnus awakes to darkness, she must face a destroyed Sanctuary, city, and even world. But beneath the apocalypse, something deeper awaits her discovery if she can find it in time.
- A confused Dr. Magnus wakes to find the Sanctuary devastated and the city in ruins, but she has no idea how it happened; only that it was a long time ago. No-one else is about and all the captured abnormals are missing. While searching the remains she is pounced on by a vicious creature, leading to two armed men rescuing her and taking her to a nearby abandoned building. After being forcibly hosed down and dumped in a room on her own Magnus becomes fearful when an aggressive man, with a familiar face, enters.
The man is a very dishevelled Will who reveals that Magnus died three years ago in the "Battle of Buenos Aries", and will not believe that Magnus is who she says she is.
At that moment the group comes under attack from a large number of abnormals. One of the abnormals bites "Jason", one of the group, and Will shoots him dead implying some sort of Zombie like infection. before giving the order to move out.
While this happens Magnus escapes from the room, taking a gun with her. She finds a scared teenage girl who pleads with Magnus not to kill her. The girl introduces herself as Jessica Mitchell, when they find shelter at the remains of the Sanctuary, but Jessica warns Magnus they must not stay, as they will get found.
Magnus manages to get some of her old computers to work, and comes across a video of herself saying that they are losing the battle and she is "sorry for everything."
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